Some of the military alternators have a screw on the side that is a cap basically that covers a smaller, fine screw that is an adjustment for the alternators output...you turn it one way to lower and the other to raise the voltage out to the batteries. The screw is VERY sensitive so if you need to adjust it, a little goes a long way.
Put a voltmeter on the batteries and you should read 28.8 volts fully charged...that is what the alternator should be putting out as well...check the alternator wire #5, thats the large wire from the alternator to the foot starter switch. You should have 28.8 volts there...if not, and your truck has the adjustable output, try to adjust it to 28.8...if you cant, think bad alternator.
On the 12 volt accessories on a 24 volt system...I did this for a while...I kept getting one dead battery about once a year...you can picture it like this basically:
The 2 batteries are kind of like water tanks...if fully charged, picture them both full....
Draw in 24 volts of both batteries evenly and the 2 are at the same level...alternator charges both evenly back to full.
If you draw 12 volts off one and 24 volts off both, then the one with the added 12 volt draw has a lower level than the other...now the alternator will either fill both batteries evenly till one is full and that will leave one undercharged, the 12 volt draw amount...
OR
The alternator will charge both batteries evenly until the lower level battery is full...this will overcharge the battery that did not have the 12 volt draw.
First scenario leaves a battery low and susceptible to going bad like a dead battery...that was my experience.
Second scenario leaves one battery overcharged over and over and could lead to the explosion.
Either way, a 24 to 12 volt converter is a great cure...the other way to fix this is to mount a 2nd alternator in 12 volts and run a single battery in 12 volt...this does complicate things but it cures the problem...
Lord send your Holy Ghost into our hearts and make the desire of our hearts Your Will.
Pro-choice, that's a LIE, babies don't choose to die!!